Real-time cryo-electron microscopy data preprocessing with Warp

Cohomology of Cryo-Electron Microscopy

The goal of cryo-electron microscopy (EM) is to reconstruct the 3-dimensional structure of a molecule from a collection of its 2-dimensional projected images. In this paper, we show that the basic premise of cryo-EM—patching together 2-dimensional projections to reconstruct a 3-dimensional object—is naturally one of Čech cohomology with SO(2)-coefficients. We deduce that every cryoEM reconstruc...

Mathematics for cryo - electron microscopy

Single-particle cryo-electron microscopy (cryo-EM) has recently joined X-ray crystallography and NMR spectroscopy as a high-resolution structural method for biological macromolecules. Cryo-EM was selected by Nature Methods as Method of the Year 2015, large scale investments in cryo-EM facilities are being made all over the world, and the Nobel Prize in Chemistry 2017 was awarded to Jacques Dubo...

A Technique for Real-Time Data Preprocessing

A processing system is presented that implements simultaneously the efficiency of the special-purpose processor and the total applicability of the general-purpose computer characteristics commonly though of as being mutually exclusive. The solution adopted is that of specializing the machine by programming the hardware structure, rather than by adding software systems to it. Data are organized ...

The Development of Cryo-electron Microscopy

Sinogram Denoising of Cryo-Electron Microscopy Images

Cryo-electron microscopy has recently been recognized as a useful alternative to obtain three-dimensional density maps of macromolecular complexes, especially when crystallography and NMR techniques fail. The three-dimensional model is constructed from large collections of cryo-electron microscopy images of identical particles in random (and unknown) orientations. The major problem with cryo-el...